Lee Katz

indeed theiagen

[NEW LINK] Linux intro and intermediate classes

1

Help wanted: Please show me any introductory or intermediate Linux command line courses.

Hi, following up on #14 , is there any chance of including authors and affiliations in the docx output? This would be useful for getting track changes from people who...

biostimulants

3

Probably want to add biostimulants microbes in case that ever becomes relevant https://www.agricen.com/agricultural-biostimulants#:~:text=Agricultural%20or%20plant%20biostimulants%20are,to%20improve%20nutrient%2Duse%20efficiency

Might want to sample from @dr-joe-wirth 's PHANTASM at .

possibly repressed genomes

2

The following genomes did not download in Kalamari 5.3.3. I'm wondering if I need to replace these. CP000927 CP000937 CP000949 CP000950 CP001010 NC_000907 NC_000915 NC_003454 NC_003888 NC_007644 NC_010465 NC_016771

_This is untested_ except that I know that there aren't syntax errors. Addresses #15 Adds `--clip` to remove any soft clipping and convert them to hard clipping Examples (in theory):...

docx format

1

Hi, could you add a format option so that we could choose docx or pdf? Thank you! For reference: * https://github.com/openjournals/inara/issues/56 * https://github.com/openjournals/inara/issues/14

Has anyone actually compiled jellyfish with bindings?

8

I cannot get the bindings to work for the life of me but I would like to (CentOS7). And then I would like to get the recipe together in bioconda...

update khmer

29

khmer does not play well with python 3.12 and so I have updated the requirement. More information: ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request...