lshep

The chromVARmotifs has not been updated in 7 years, has several open issues with no response, and there is no set of action to perform any sort of systematic checking...

It looks like the builders missed the Sat build. I would expect the new version of rhdf5 to be available later today, after today's builds and propagation, once that happens...

You still have a library call to `chromVARmotifs` in the documentation. Please remove. Since you now call AnnotationHub/ExperimentHub you will likely need to list them in your DESCRIPTION file appropriately...

The BiocCredentials account is now wrong and corrupt for your two account. We assume the submitter is the maintainer and match the submitter github userid with the maintainer email in...

Please both look for an email entitled `BiocCredentials account`

Please use `tempdir()` to specify the temporary output directory instead of manually "/tmp" this ensure cross OS compatibility and write access by the user making the calls.

I just did a quick check and the version is 2.1.2 on merdia1 but 2.1.3 is required. @jwokaty can you check why this CRAN package is not picking up the...

It will be important to try and cut back on the check time as much as possible.

In your vignette, you currently are writing to the home directory when you are doing `~/myanalysis/` and `~/myanalysis2`; This is very problematic! Please do not write to the home directory...

I'm slightly concerned with the name. The currently active [domino package on CRAN](https://cran.r-project.org/web/packages/domino/index.html) seems to have completely different functionality? We also like to have a clean branch to add into...