Lorenzo

Hi, Sorry for the very very late answer. I must have overlooked it. Have you tried to open the h5 file using Fiji? Could you share the plant-seg configuration you...

Hi Qin! So I checked the code and the `save raw data` option only works for h5 files, so the quick solution would be to use h5. I can fix...

Hi Pradeep, Thanks for using plantseg! About the shape mismatch, that's plantseg fault, the nuclei image is never preprocessed internally (so the setup in the preprocessing config is ignored) and...

We actually as of today have native support for windows. I am still testing it around, so I still expect bugs. In the readme you can find the installation instructions....

Thanks! that would be awesome! :)

Perfect, thanks a lot for testing it. In the next days (maybe a week) we will release stand alone binaries for Windows, and a new launcher to allow drag and...

It would be cool to have a proper schedule-engine for that.. I think that Anna's idea to use Dask could really allow us to do this in a cool way.....

Hi Lucrezia, I hope I can help you with your request. From the error message it seems that the error comes from a wrongly formatted or corrupted h5 file. Could...

Hi Clinton, Sorry for the late answer. I was two weeks out of the office. Thanks for letting me know about this error. There is a conflict between two dependencies...