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Healp with CreateNetwork edges.txt interpretation
I ran CreateNetwork on a batch of " _bound.bed" files and got
- adjancent.txt
- edges.txt
- a paths and edges file for each TF for which inputted the bed file.
The edges.txt file output is attached.
- What are the column names?
- Is this the file to use for looking at the whole network?
- Which column is source and which is target?
- At the last column there is are names of TF matched to my input mapping files. However, in colmn 4 ="Sites 3" the original HOCOMOCO names are still retained.
If you can please clarify which file to use to build the network and how the connections go it would be very helpful! edges.txt