medpy

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In numpy 1.23.1 (or sooner, I didn't bisect it) using lists to slice is no longer allowed. It gives the error message: `IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis...

Erotemic

Hi there, This issue is in reference to the following line: https://github.com/loli/medpy/blob/39131b94f0ab5328ab14a874229320efc2f74d98/medpy/metric/binary.py#L79 Shouldn't an empty reference and an empty result set output a Dice coefficient of 1 rather than 0?...

baumgach

digital-copyright

1

Hi loli!👋, I added this optional feature to digitally sign you source-code and track it on a blockchain node should you ever be audited or experience a software supply-chain attack....

JudeSafo

Issue with graphcut support

7

I am running Ubuntu 20.04LTS. I have installed the required packages for support ``` sudo apt-get install libboost-python-dev build-essential ``` The following install succeeds in a fresh py39 environment established...

matthewdeancooper

Handle few deprecations in scipy

1

during CI on my [hiwenet](GitHub.com/raamana/hiwenet), I discovered a ton of deprecation warnings from scipy : https://travis-ci.org/github/raamana/hiwenet/jobs/658810855 mostly asking medpy to move from scipy to numpy for functions such as sum,...

raamana

Broken links and incomplete notebooks

1

Hi, The following guide page has broken links and incomplete demonstration notebook. https://loli.github.io/medpy/information/commandline_tools_listing.html

musman2012

No module named 'medpy.graphcut.maxflow'

5

Hi, I wanted to use a graph based image segmenter and this library worked flawlessly when installed in a google collaboratory remotely. However, when I import it locally with jupyter...

jeronimocabezuelo

reduce redundant computation when computing multiple surface distance-based metrics

2

Hi there, is there a specific reason for `__surface_distances` being hidden with the __ prefix? Imagine someone (hint: me :-) ) would like to compute multiple surface-based metrics for the...

FabianIsensee

test failed for graphcut.maxflow

7

Hi, I'm trying to package medpy for ArchLinux. After building medpy, I run `PYTHONPATH="${PWD}/build/lib.linux-x86_64-3.7" nosetests -v`, and here is the log. ``` ==> Starting check()... Failure: ModuleNotFoundError (No module named...

hubutui

Anisotropic Diffusion Numpy Warning (+ solution ?)

1

The current implementation of Anisotropic Diffusion gives two FutureWarnings (from numpy): ```` FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future...

StenSipma