diffcyt

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Insights into data transformation

2

Hi, I was wondering if you have anymore insights/guidance on the data transformation. I have a spectral flow cytometry data set, that a collaborator acquired. I've tried the general 150...

Thapeachydude

An update to edgeR

2

Hi, I posted [edgeR questions for use with cytometry counts](https://www.biostars.org/p/9608473/), but didn't get any answer yet. There are 3 main points: - how to set the filtering min.count when libraries...

SamGG

`diffcyt` after `CATALYST` returned NA in `diffcyt-DS-LMM` even when clusters have "sufficient" number of cells across at least half of samples

1

Hi there, In my DS analysis, I checked the number of cells in each cluster (14 clusters) across samples, and they seemed to have enough, but the analysis still returned...

denvercal1234GitHub

ds analysis with multiple conditions

1

I have a dataset with multiple conditions and I would like to perform DS analysis but I am not sure I the data are prepared properly. ``` ei sample_id condition...

feanaros