BestPracticesST
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'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book
Best Practices for Spatial Transcriptomics Analysis with Bioconductor
Repository containing source files for 'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book.
Website
The website for the compiled version of the book is at: https://lmweber.org/BestPracticesST/
Source files
The main content of the book is in the Quarto .qmd
files in the chapters/ subdirectory, with one .qmd
file per chapter.
Rendering and publishing to the website uses the GitHub Actions workflow in: .github/workflows/
Render locally
Run quarto render
to render the book locally.
Publish manually
Run quarto publish
to render and publish to GitHub Pages manually (without using GitHub Actions workflow).