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read.seq end with read.name when using pyfastx.Fastq in parsing long read FASTQ file

Open QYanwei opened this issue 4 months ago • 4 comments

Hi, I found an error when I use pyfastx.Fastq to parsing the long read FASTQ file. The read.name untimely appearance in the end of read.seq string, such as 'GGCATTTTTCCGTTTGTCACTTCTTCTTCGCTATCCTGTT@390872df-5709-4012-8278-1f4969a328af ch=103 start_time=2021-01-21T19:40:20.617'. The pyfastx version is 2.0.2. Can you check what this issue is?

code: fq = pyfastx.Fastq('../test/ecoli.fq.gz') for read in fq: if '@' in read.seq: print(read.name) print(read.seq) print(read.qual)

QYanwei avatar Feb 25 '24 07:02 QYanwei