Unet-Segmentation
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lmb-freiburg
The U-Net Segmentation plugin for Fiji (ImageJ)
Hi, I recently upgraded my GPU from the RTX 2080ti to a RTX 3090 and now realize that the UNET plugin only specifies up to CUDA 10.x which is no...
Hi everyone! I am trying to use the Caffe weights available at https://lmb.informatik.uni-freiburg.de/resources/opensource/unet/ for a model implemented in Tensorflow. To be more specific, I read the 2d_cell_net_v0.modeldef.h5 file in order...
Good afternoon! I am trying to use the weights available on the project's website to do transfer learning on TensorFlow. I would like to test if I implemented that well,...
Hi, I'm attaching an imageJ Fiji script of batch detection for validation of network outcome. The script basically covers the primary parameters needed to run the detection with basic ImageJ...
Hi there, I hope you are well! I am trying to run the U-Net plugin (not on a remote server). I followed the video instructions here (https://lmb.informatik.uni-freiburg.de/resources/opensource/unet/#troubleshooting) to open the...
Pushing the job cancel button with multiple finetuning jobs is ignored.
Hey all, I currently have my image processing pipeline for cell detection in python and I've been looking for ways to integrate your UNET implementation into it. More specifically, I...
Hi, I am trying to install GPU version on a backend server and facing this error with make -j install. #error -- unsupported GNU version! gcc versions later than 6...
Hello, I'm trying to segment/count cells in 3D fluorescent confocal Z-stacks (1024x1024x19; XxYxZ) that have been manually annotated with Nikon imaging software. I set up frontend on a PC and...
Hey, First thanks for your awesome plugin! Some background: I'm trying to create a detection model for bone cells, in order to create an automated tool for cell counting. It...
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The U-Net Segmentation plugin for Fiji (ImageJ)