Error No rule to produce ....
It was not possible for me to run the code on the HPC at my institution. I replicated all steps in the README page, even naming the .tsv file the same as in the example. Unfortunately, an error occurred:
I ran the following command in the hla_typing directory with "(snakemake)" at the start of the command line. snakemake --use-conda --use-singularity --cores 1 typing/dataset_1.all.multihla
~/miniconda3/envs/snakemake/lib/python3.11/site-packages/google/protobuf/internal/api_implementation.py:110: UserWarning: Selected implementation cpp is not available. warnings.warn( Building DAG of jobs... MissingRuleException: No rule to produce typing/dataset_1.all.multihla (if you use input functions make sure that they don't raise unexpected exceptions).
Next to this, I got an error using exactly the same code as in the README page because the number of cores needed to be noted. Can you help me?
Kind regards, Adam