ljw90607

@rvolden If you could help me with this issue, I would really appreciate it!

To @rvolden, I did run on linux server with RAM size of 264568344 kB total and free memory of 68946012 kB at the moment. I previously tried to find the...

Dear @rvolden, Thank you very much for your support. I'm really looking forward to hear back from you soon! Jungwoo

Dear @rvolden, Did the previously found issue get fixed? I wasn't informed about it for awhile, so I was wondering! Thank you for your support!

Dear @rvolden, Thank you for your wonderful help. This time actually previously found memory issue did not come up, but I still get the error message below, I checked each...

Dear @rvolden, I am actually trying out few different commands since I found out that the output "isoform" was created in incorrect folder. I will let you know how the...

Dear @rvolen, After I tried with new input, I ran into another problem which says below; /data/ONT_RNA/Data/PM-AU-0002-N-A1//parsed_reads/44/Isoform177860.fasta /data/ONT_RNA/Data/PM-AU-0002-N-A1//parsed_reads/44/Isoform177860_subreads.fastq 1_3l5571-5r5485~3l5577-5r5486~_165631238_165651231_22.0_81.0 /data/ONT_RNA/Data/PM-AU-0002-N-A1//parsed_reads/44/Isoform177860.fasta /data/ONT_RNA/Data/PM-AU-0002-N-A1//parsed_reads/44/Isoform177860_subreads.fastq 1_3l5571-5r5485~3l5577-5r5486~_165631238_165651231_22.0_81.0 determine Traceback (most recent call last): File "createConsensi.py",...

Dear @rvolden, I was wondering if you could help me with the issue above. Thank you for your help.

Dear @rvolden, I do get the isoform_list file not empty. I also have fixed the config file list as you have mentioned, but still get the error as below. "/data/ONT_RNA/Data/PM-AU-0002-N-A1//parsed_reads/36/Isoform146777.fasta...

@rvolden, Another thing I noticed is that all of the subreads.fastq output are empty, and only the fasta file has some contents. I am not sure if this could be...