liusfore

How to deal with this problem? The file folder "mmcif_files" and file "obsolete.dat" are both newly updated.

when the protein length is larger than 1022, the recommend output will be staggered by two digits

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here is the output, and the number of residues output by the language model is reduced by two. F1037Y F1038S Y1039N S1040I N1041M I1042N M1043F N1044F F1045K F1046T K1047E T1048I...

I have the problem when "deeprank-gnn-esm-predict 1B6C.pdb "

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2023-08-28 14:39:42,737 predict:218 INFO - Generating graph, using 95 processors /mnt/data/anaconda/envs/deeprank-gnn-esm-gpu/lib/python3.9/site-packages/pdb2sql/interface.py:147: UserWarning: No contact atoms detected in pdb2sql warnings.warn('No contact atoms detected in pdb2sql') Issue encountered while computing graph /tmp/tmpckjcd5ha/1B6C.pkl...

How to deal with the problem when starting data preprocess?

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(dyMEAN) dell@dell-Precision-7920-Tower:/mnt/e/code/dyMEAN$ bash scripts/data_preprocess.sh all_structures/imgt all_data Locate the project folder at /mnt/e/code/dyMEAN Processing SAbDab with output directory /mnt/e/code/dyMEAN/all_data Processing RAbD with output directory /mnt/e/code/dyMEAN/all_data/RAbD 2023-06-15 15:59:18::INFO::Namespace(fout='/mnt/e/code/dyMEAN/all_data/rabd_all.json', n_cpu=4, numbering='imgt', pdb_dir='/mnt/e/code/dyMEAN/all_structures/imgt', pre_numbered=True,...