Pass in existing Seurat/SingleCellExperiment Object

[bc2zb]

Is it possible to pass in an existing Seurat object (or converted SingleCellExperiment object)? I have a pretty robust pipeline that does QC, clustering and such, would like to have some level of preservation of those clusters and such.

[crazyhottommy]

Thanks, we should make the pipeline more flexible. Will put it on our todo list.

[crazyhottommy]

@baigal628 I rethink about it. Let's create a tutorial using the MAESTRO R functions to process the Seurat object. Not necessary put this into snakemake workflow.