Arend Lis

Broken Axis

1

Hey, first of all I want to thank you for the very nice package. I have a question or maybe an extension to your package. I am visualizing the exon/intron...

Applying SL, TMM, and IRS on log2 data or raw data

2

Hey, I have a question regarding the three normalization methods that you applied. Actually it makes a difference whether to apply for example SL on raw data and log2 the...

NA values in model

1

Hello, I am executing limma on a proteomics dataset with 5 conditions and each condition having 3 samples. Limma is returning: "Partial NA coefficients for 209 probe(s) by executing: ```{r}...

PRONE

13

Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/lisiarend/PRONE Confirm the following by editing each check box...

Error in BioConductor Developer Version 3.20

1

Dear DEqMS developer, I am in the process of submitting my package "PRONE" (https://github.com/lisiarend/PRONE) to Bioconductor, which includes DEqMS as a dependency. However, your package is currently unable to be...

snpClust Problem while setting all > 1 to 1

2

Hello, I have a problem while trying to cluster my LD (large dgCMatrix) with snpClust. My input is a non-public data set, so I cannot hand over the data. But...