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Error in subcommand annoate in the Singularity image MitoZv3.4.

Open Phismil opened this issue 1 year ago • 2 comments

Dear Guanliang I hope you are doing well. Recently, I received an error in the annotate subcommand within Singularity v.3.4 that complains about the tRNA file. I have attached the log file. Thank you in advance for any suggestion

mitoz.log

Phismil avatar Sep 15 '23 12:09 Phismil

Hi Phismil,

I had a look your log file, the related information is this:


2023-09-15 12:00:41,584 - mitoz.utility.utility - INFO - 
rRNA_annotation() return:
s_rRNA_ft: /mnt/lustre/users/aemami-khoyi/eDNA/map/tmp_SW_sw_map.fasta_mitoscaf.fa/SW_sw_map.fasta_mitoscaf.fa.s-rRNA.ft
l_rRNA_ft: /mnt/lustre/users/aemami-khoyi/eDNA/map/tmp_SW_sw_map.fasta_mitoscaf.fa/SW_sw_map.fasta_mitoscaf.fa.l-rRNA.ft

2023-09-15 12:00:41,584 - mitoz.utility.utility - INFO - 
combine_annotations_and_find_control_region() chdir to /mnt/lustre/users/aemami-khoyi/eDNA/map/tmp_SW_sw_map.fasta_mitoscaf.fa

But there is no error message in it.

Please you also have the stderr log?

linzhi2013 avatar Sep 15 '23 13:09 linzhi2013

Dear Guanliang My apologies; it seems that it was a minor permission issue due to mounting a wrong directory that went unnoticed from my side. The container is fine. Thank you for your reply

Phismil avatar Sep 16 '23 09:09 Phismil