MitoZ
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How to introduce breakpoints?
3.4
Udocker
yes
The command you used?
How to introduce breakpoints in fasta file in order to complete the incompletely annotated genes?
Log messages from MitoZ (stdout and stderr)
Maybe you can check this part: https://github.com/linzhi2013/MitoZ/wiki/Tutorial#6-broken-genes
And this https://github.com/linzhi2013/MitoZ/wiki/The-%27mitoz-tools-gbfiletool%27-command
mitoz-tools gbfiletool
is only avaialable in the MitoZ 3.5-beta versions (https://github.com/linzhi2013/MitoZ/releases/tag/3.5-beta-1).