cobra
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new installation of miniconda I run into this error
ImportError Traceback (most recent call last) Cell In[23], line 4 2 path='show' 3 test_path=("data1/densiflorus (plastid)- MT740250.1 retained.fasta") ----> 4 BCAWT_auto_test.auto_test(path,test_path) 5 BCAWT_auto_test.auto_check_file(path)
File ~/miniconda3/lib/python3.11/site-packages/BCAWT/BCAWT_auto_test.py:24, in auto_test(path, test_file) 21 from BCAWT import BCAWT 22 file = open(test_file, "r") ---> 24 BCAWT.BCAW(main_fasta_file = [file] , save_path= path, Auto=True)
File ~/miniconda3/lib/python3.11/site-packages/BCAWT/BCAWT.py:34, in BCAW(main_fasta_file, save_path, ref_fasta_file, genetic_code_, Auto) 32 #from Bio.Alphabet import IUPAC 33 from Bio.Seq import Seq ---> 34 from Bio.SeqUtils import GC 35 from Bio.Data import CodonTable 36 #from Bio.Alphabet import generic_dna
ImportError: cannot import name 'GC' from 'Bio.SeqUtils' (/home/u1/miniconda3/lib/python3.11/site-packages/Bio/SeqUtils/init.py)