schemasheets
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the converter doesn't work with the gsheet example
I've tried to use the sheets2linkml
with the example of gsheet you provide, but I get the error:
(models_linkml) MacBook-Pro-2:linkml dorota$ sheets2linkml --gsheet-id 1wVoaiFg47aT9YWNeRfTZ8tYHN8s8PAuDx5i2HUcDpvQ personinfo types prefixes -o personinfo_gsh.yaml
Traceback (most recent call last):
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 110, in merge_sheet
self.add_row(row, schemasheet.table_config)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 116, in add_row
for element in self.row_focal_element(row, table_config):
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 372, in row_focal_element
raise ValueError(f'Could not find a focal element for {row}')
ValueError: Could not find a focal element for {'record': '', 'field': 'id', 'key': 'yes', 'multiplicity': '1', 'range': 'string', 'parents': '', 'desc': 'any identifier', 'schema.org': 'identifier', 'wikidata': '', 'belongs': '', 'status': '', 'special': '', 'special2': '', 'notes': ''}
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/Users/dorota/miniconda3/envs/models_linkml/bin/sheets2linkml", line 8, in <module>
sys.exit(convert())
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 651, in convert
schema = sm.create_schema(list(tsv_files))
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 64, in create_schema
self.merge_sheet(f, **kwargs)
File "/Users/dorota/miniconda3/envs/models_linkml/lib/python3.9/site-packages/schemasheets/schemamaker.py", line 113, in merge_sheet
raise SchemaSheetRowException(f'Error in line {line_num}, row={row}') from e
schemasheets.schemamaker.SchemaSheetRowException: Error in line 3, row={'record': '', 'field': 'id', 'key': 'yes', 'multiplicity': '1', 'range': 'string', 'parents': '', 'desc': 'any identifier', 'schema.org': 'identifier', 'wikidata': '', 'belongs': '', 'status': '', 'special': '', 'special2': '', 'notes': ''}
I've installed your package from pip
, v0.1.21
, python3.9
, OSX.