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Published 20 hours ago • verified publisher icon lindvalllab

Missing scripts to create `icustay_detail.csv` and `ventdurations`

Open fbragman opened this issue 5 years ago • 3 comments

Hi,

Thanks a lot for this repository and for making everything public. I am trying to reproduce the dataset you created to run some experiments. I have tried running the R code in ./cohort_curation but it requires some user-derived csv's.

Would it be possible to upload the scripts that created these files?

Many thanks,

Felix

fbragman avatar Sep 10 '20 11:09 fbragman

@EdwardMoseley hey Ned, could you help answer this question?

kexinhuang12345 avatar Sep 10 '20 23:09 kexinhuang12345

Hi: Thank you for codes public. I have one problem: how to distribute the pretraining dataset and finetuning dataset? can you set a sample for me? thanks

niulu123 avatar Sep 15 '20 11:09 niulu123

@fbragman The scripts for those MIMIC-III-derived tables--(1) icustay_detail and (2)ventdurations-- come directly from the MIT-LCP code repository and can be found:

  1. https://github.com/MIT-LCP/mimic-code/blob/master/concepts/demographics/icustay_detail.sql
  2. https://github.com/MIT-LCP/mimic-code/blob/master/concepts/durations/ventilation_durations.sql

EdwardMoseley avatar Nov 03 '20 14:11 EdwardMoseley