CrossMap
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Critical error with v0.3.8
CrossMap
version 0.3.8 installed with
pip install CrossMap
using Python 3.5.2 throws the critical error
Traceback (most recent call last):
File "CrossMap.py", line 27, in <module>
from cmmodule import bgrMerge
File "/Users/maurits/miniconda3/lib/python3.5/site-packages/cmmodule/bgrMerge.py", line 14, in <module>
from cmmodule import wig_reader
File "/Users/maurits/miniconda3/lib/python3.5/site-packages/cmmodule/wig_reader.py", line 10, in <module>
from bx.bbi.bigwig_file import BigWigFile
File "lib/bx/bbi/bigwig_file.pyx", line 1, in init bx.bbi.bigwig_file
File "__init__.pxd", line 918, in init bx.bbi.bbi_file
ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject
Hi, I have no idea about this error message. It relates to the bx-python package (https://github.com/bxlab/bx-python). FYI, I used bx-python (v0.8.0) without any problems.
Seems to be an issue of numpy 1.15. I came across the same error, which disappeared when the numpy was updated to 1.19.