Redundancy in these lines from mapvcf.py if "no-comp-allele" option is turned on?

[lwtan90]

https://github.com/liguowang/CrossMap/blob/bee595c8d1598c79e1f9933a8c02473e2bfc0630/src/cmmodule/mapvcf.py#L197-L222

[liguowang]

Don't understand what you meant, but I do realize there is an issue here. The "noCompAllele" option cannot deal with variants that have multiple alternative alleles.