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Published 20 hours ago • verified publisher icon liguowang

Redundancy in these lines from mapvcf.py if "no-comp-allele" option is turned on?

Open lwtan90 opened this issue 5 months ago • 1 comments

https://github.com/liguowang/CrossMap/blob/bee595c8d1598c79e1f9933a8c02473e2bfc0630/src/cmmodule/mapvcf.py#L197-L222

lwtan90 avatar Jan 23 '24 00:01 lwtan90

Don't understand what you meant, but I do realize there is an issue here. The "noCompAllele" option cannot deal with variants that have multiple alternative alleles.

liguowang avatar Jan 24 '24 19:01 liguowang