Liam

@rambaut

how to know the different rates with different partitions ?

4

For example: [300, 0.5](((Taxon1:0.2,Taxon2:0.2):0.1,Taxon3:0.3):0.1,Taxon4:0.4); [400, 1.75](((Taxon1:0.2,Taxon3:0.2):0.1,Taxon2:0.3):0.1,Taxon4:0.4); [300, 0.75](((Taxon1:0.2,Taxon2:0.2):0.1,Taxon3:0.3):0.1,Taxon4:0.4); how to know the rate is 0.5, 1.75, and 0.75 for the three trees?

Substitution rates

1

Dear @amkozlov, What is the Substitution rates for each value? Substitution rates (ML): 0.077246 0.706620 0.177535 0.293354 2.188834 1.000000

Dear @theosanderson, Could you help me build big trees of SC2, thanks.

Error in `paletteer::paletteer_d()`:

1

Dear @m-clark, Please see below:

Dear @agmcfarland, When I run the below code: ` tree_raxml$edge.length[tree_raxml$edge.length == 0]

anything wrong with my code?

18

Dear @edzer, Please see below: ``` shape

install snakemake using `pip install git+https://github.com/snakemake/snakemake`

2

Dear @johanneskoester, ``` pip install git+https://github.com/snakemake/snakemake Collecting git+https://github.com/snakemake/snakemake Cloning https://github.com/snakemake/snakemake to /private/var/folders/q4/gvrdsnj94vl527nfhj25rxh40000gn/T/pip-req-build-k9xdgyck Running command git clone --filter=blob:none --quiet https://github.com/snakemake/snakemake /private/var/folders/q4/gvrdsnj94vl527nfhj25rxh40000gn/T/pip-req-build-k9xdgyck Resolved https://github.com/snakemake/snakemake to commit 3eeecc67e995e770e1812f294e8e26549d301ff3 Installing build dependencies ... done...

what is the `cluster_span` meaning?

1

Dear @yatisht,