vcf errors

[gevro]

Hi, The final vcf is giving me these errors when I look at it with bcftools:

[W::bcf_hrec_check] Invalid tag name: "'SampleID'" [W::bcf_hrec_check] Invalid tag name: "Compound_htz(sample)" [W::bcf_hrec_check] Invalid tag name: "Count_hom(sample)" [W::bcf_hrec_check] Invalid tag name: "Count_htz(sample)" [W::bcf_hrec_check] Invalid tag name: "Count_htz/allHom(sample)" [W::bcf_hrec_check] Invalid tag name: "Count_htz/total(cohort)" [W::bcf_hrec_check] Invalid tag name: "Count_total(cohort)" ##fileformat=VCFv4.2 [W::vcf_parse_format] FORMAT 'AD' at 1:90258 is not defined in the header, assuming Type=String [W::vcf_parse_format] FORMAT 'DP' at 1:90258 is not defined in the header, assuming Type=String [W::vcf_parse_format] FORMAT 'PS' at 1:136554 is not defined in the header, assuming Type=String

I suspect there are bugs in how annotSV is defining the vcf headers.