lfaller

Hi all, I would like to identify all unique kmers of a certain length in a set of input fasta sequences and then report the origin of the kmer as...

Extra text rendered over Krona output file

2

Hi all, My Krona plot rendered with extra text over it (see below): I am using Chrome Version 65.0.3325.162 (Official Build) (64-bit) to view this. Do you think this is...

config file cannot be found (using Docker to run the scripts)

1

Hi all, I ran the code according to the Docker instructions but the script cannot find the `config.json` file even though it's in the main directory. ``` $> ls -la...

How to visualize output from the long reads tutorial

3

Hi all, I have Minion data for two closely related microbial strains. I assembled the two strains into two assemblies of four and five contigs. I then followed your notes...

bibliography("html") produces error messages

5

Dear Dr Boettiger, First of all, thanks for providing this package, it's really quite useful for me! I've been using the `citep` function in my text and it works well,...

The program seems stuck

2

Sometimes, Ray Meta seems stuck. The log output looks as follows: ``` ... Rank 7 computing contig abundances [63043/130531] [118/118] Rank 77 computing contig abundances [62815/130236] [1/118] Rank 77 computing...

Looking at the `OutputNumbers.txt` file, it looks like I get the same numbers for scaffolds and contigs: ``` Contigs >= 100 nt Number: 455357 Total length: 76317200 Average: 167 N50:...

Hi all, I was able to extract and parse the GFF3 file for the two mario strains in edge but did not find the genes that were specifically added. I...