Generating sample table when updating database with MAGs - GTDB taxID and Accession Number

[PeterCx]

Hi there,

I am trying to update the GTDB -r207 database I have downloaded using Struo2 with my own MAGs. It is not clear how I get some of the information including "ncbi_organism_name", "gtdb_taxid" and "accession".

I have annotated my MAGs using GTDB-Tk. Using the FastANI I have de-replicated my genomes removing those with 95% ANI. This has left me with a ~ 3000 MAGs. Given that these MAGs are not close to any other genome in GTDB I don't understand how I can get a taxid? I have attached the current information I have from GTDB about my MAGs. GTDB_MAG_Information.txt

Your help is greatly appreciated.

Kind regards,

P