DeepMased - stalled out on finding features

[TealFurnholm]

Greetings,

I am trying to see if my merge-overlap.pl script creates chimeras when I combine output from different assemblers.

As you can see, nothing has happened in days: Using TensorFlow backend. 2020-11-10 21:33:21,376 - Indexing file: MERGED_CONTIGS_NOSPLIT_VDD.fa 2020-11-10 21:33:25,745 - Cannot find MERGED_CONTIGS_NOSPLIT_VDD_sorted.bam.bai; creating... 2020-11-10 21:35:08,541 - Processing: MERGED_CONTIGS_NOSPLIT_VDD_sorted.bam 2020-11-10 21:35:10,378 - Number of contigs in the bam file: 1682485

Checking "top" - it is still running, though I wonder it is only using 1 core (100%). PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 40639 txxf 20 0 11.542g 9.143g 145724 R 100.0 1.2 2262:04 python3

There's nothing in the output either. -rw-r--r-- 1 txxf gmb 0 Nov 10 21:35 MERGED_CONTIGS_NOSPLIT_VDD_sorted_feats.tsv

Any ideas why it is not working? How long should this normally take?

Best, Teal