pyteomics
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levitsky
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common task...
hi, I having a problem reading an ms2 file, basically, i'm doing this: ``` from pyteomics import ms2 reader = ms2.read(path, use_index=True) spectrum = reader[0] ``` should that work? an...
Hi, I'm using pyteomics' great mzIdentML parser to read crosslink data out of mzIdentML. There's one particular point in the code where memory use suddenly climbs:- https://github.com/PRIDE-Archive/xi-mzidentml-converter/blob/python3/parser/MzIdParser.py#L584 its when it...
Hi, I made a quick benchmark with some metabolomics files and measured the read speed of various formats. For some reason I get the worst performance with mzMLb format. I...
Hi, thanks for the great project. I'm attempting to load the latest Unimod XML file into Postgres using pyteomics and have encountered a few errors that I've attempted to solve...
While I was parsing an MGF file provided by Mascot itself(so which I can trust it is correct), I encountered with this error: ``` __main__ - ERROR - Pyteomics error,...
Good day. Is there any intention or estimated time for implementation of access to Ion Mobility data from Bruker devices? I use Pyteomics regularly and now I'm starting to face...
