KaiLi

'list' object has no attribute 'intersection'

2

Hi, @kaizhang . Thanks for developing SnapATAC2. When I was running the anndata.concat function in the "Annotating cell clusters by integrating single-cell RNA-seq data" tutorial, an error occurred "AttributeError: 'list'...

core file produced when running snap.pp.mnc_correct

2

Hi, @kaizhang . Thanks for developing this fantastic tool. When I was running the function snap.pp.mnc_correct with my own data in a Jupyter notebook, the kernel died after several minutes...

ValueError: setting an array element with a sequence.

1

Hi, @ckmah . I ran into this problem when I was running the command "bt.tl.fe_fazal2019(adata)" in the example pipeline. I used the same data in your pipeline by command "adata...

Hi @ArtRand , @mitenjain ,I followed your tutorial and got methylation call probabilities files for each read. My question is how to convert these methylation call probabilities files to methylation...