Wu-Jung Lee
So far in converting Simrad data we only parse the `.raw` files. Since `.idx` and `.bot` files also contain useful information and the format is simple, let's also parse them...
This PR addresses the issues with for "Indexing with a boolean dask array is not allowed" encountered when calibrating EK80 complex data that is lazy-loaded. This issue essentially calls for...
There are multiple deprecation warnings that we should address in the next release. One of the warning is related to the use of `pkg_resources` in `datatree`, but our `datatree` version...
The current `test__groupby_x_along_channels` does not test for output values of `_groupby_x_along_channels`. The output values of this function are not tested in any other test functions either. The test function also...
As the name suggested! This involves 3 parts: - [x] add/update parser for ULS6 format - [x] determine storage location for data variables in the new format (plus reviewing the...
The transient noise (TN) filter from [Ryan et al. 2015](https://doi.org/10.1093/icesjms/fsv121) is slow due to the need to sort in calculating median for each window surrounding a given pixel. Alejandro Ariza...
Some of the current tests (such those in #1319) run through `open_raw` and `compute_Sv` in order to test downstream functionalities that require both the Sv dataset and the correspondning `EchoData`...
Error when checking subdtype at parse_base ``` AttributeError: `np.complex_` was removed in the NumPy 2.0 release. Use `np.complex128` instead. ``` Here's is one instance of the error message: https://github.com/OSOceanAcoustics/echopype/actions/runs/9558726670/job/26347885285#step:12:17945
With #1318 , the vessel log data would be stored in the `Vendor_specific` group. However right now these data is not propagate down to the Sv and MVBS datasets if...
In April 2024 we updated the processing level definitions in https://echolevels.readthedocs.io/en/latest/levels_proposed.html via discussions between @leewujung @valentina-s @brandynlucca . Let's update the implementation to reflect these changes. The main change is...