margins
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`level` argument not working
Please specify whether your issue is about:
- [x] a possible bug
- [ ] a question about package functionality
- [ ] a suggested code or documentation change, improvement to the code, or feature request
Hi,
I think I think the level
argument in the margins_summary()
function is not working as intended: Setting the confidence level to a different value than 95 has no effect on the output. It seems the argument is simply ignored. This happens with lm()
and lme4::glmer()
, and when using either margins_summary()
or summary(margins())
. Strangely, plot(margins())
works as described in the vignette -- but, contrary to what is written there, it is not possible to specify multiple confidence levels.
Hope I'm not misunderstanding something here! Many thanks in advance!
Example:
## load package
library("margins")
## code goes here
data(mtcars)
mod <- lm(mpg ~ hp, data = mtcars)
margins_summary(mod) # baseline
margins_summary(mod, level = .9) # same result
margins_summary(mod, level = .99) # same result
# just for fun
margins_summary(mod, level = 90) # same result
margins_summary(mod, level = 99) # same result
margins_summary(mod, level = .01) # same result
margins_summary(mod, level = "99") # same result
# same here
summary(margins(mod,
level = 99))
# These work
plot(margins(mod),
level = c(.9))
plot(margins(mod),
level = c(.999))
This produces an error ("length of 'dimnames' [2] not equal to array extent")
plot(margins(mod),
level = c(.999,.9))
## session info for your system
sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Ventura 13.3.1
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] margins_0.3.26
loaded via a namespace (and not attached):
[1] Rcpp_1.0.10 rstudioapi_0.14 magrittr_2.0.3 hms_1.1.2 splines_4.2.2 MASS_7.3-58.2
[7] tidyselect_1.2.0 xtable_1.8-4 lattice_0.20-45 R6_2.5.1 rlang_1.1.0 minqa_1.2.5
[13] fansi_1.0.4 dplyr_1.1.0 tools_4.2.2 grid_4.2.2 data.table_1.14.8 nlme_3.1-162
[19] utf8_1.2.3 cli_3.6.0 ellipsis_0.3.2 lme4_1.1-31 countrycode_1.4.0 tibble_3.2.1
[25] lifecycle_1.0.3 prediction_0.3.14 Matrix_1.5-3 nloptr_2.0.3 vctrs_0.6.1 labelled_2.10.0
[31] glue_1.6.2 haven_2.5.1 compiler_4.2.2 pillar_1.8.1 forcats_1.0.0 generics_0.1.3
[37] boot_1.3-28.1 pkgconfig_2.0.3