Lucas Czech

Cannot mount large files

1

Hello, when trying to mount a large FASTA file (~30GB) with mmap, Rust is giving me an OOM panic: ``` fusta --no-daemon --max-cache 10000 SILVA_123.1_SSURef_Nr99_tax_silva_full_align_trunc.fasta [INFO] Caching method: Mmap [INFO]...

Hi again, when opening a file with windows line endings `\r\n`, and renaming a sequence, the file after unmounting is broken. Starting with ``` >a GCAC-GTG-T >b C-T--AACCC >c AT-AACGTAG...

Having a stale bot does not make issues go away, and just hides them the longer they have been unresolved, which is kind of the opposite of what should happen......

ENSEMBL-SEQUENCE does not work for all species

4

**Snakemake version** Snakemake: 8.15.2 Wrapper: "v3.13.6/bio/reference/ensembl-sequence" **Describe the bug** The path for downloading has a hard-coded structure in the [wrapper](https://snakemake-wrappers.readthedocs.io/en/v3.13.6/wrappers/reference/ensembl-sequence.html): ```python spec = ("{build}" if int(release) > 75 else "{build}.{release}").format(...