Leonardo Collado-Torres

color by group in line_with_focus

2

If you have groups of data that you want to color by group in the line_with_focus ractive, well, you might want to look at the line_with_focus2 I have here https://github.com/lcolladotor/ballgownR-devel/tree/master/clickme-test...

Hi, We've been using `clusterProfiler` for a long time and greatly enjoy your work. Recently @lahuuki ran into an issue with `enrichKEGG()`. From https://github.com/YuLab-SMU/clusterProfiler/issues/218 and other issues, we realized that...

[BUG] heatmap annotation column order is not respected by `iSEE::iSEE()`

2

**Describe the bug** Hi, using `iSEE` version 2.4.0 I can't seem to be able to set the heatmap annotation columns in the order I want them to be displayed. If...

Hi, While trying to get `rmote` working in an SGE cluster, I tried setting the `server_dir` argument to a value that would change by day and use a directory that...

Hi, To be consistent with `recount`, it'll be great if `Rail-RNA` uses the AUC as provided in https://github.com/nellore/rail/issues/47 for normalizing the samples before calculating the mean bigwig. In `recount` we...

spatialEnhance() requires lots of memory: likely due to find_neighbors() vs .find_neighbors()

5

Hi, While using `BayesSpace` version 1.4.1, I'm running `spatialEnhance()` on a dataset with the following dimensions: ```R > dim(spe) [1] 27853 38115 ``` with it, I get the following error:...

Do the same as in https://github.com/jtleek/datasharing/issues/154 to get http://lcolladotor.github.io/rpackages/

Broken "edit and contribute" link

2

The "Edit and contribute" link points to https://github.com/jbryer/Rgitbook/edit/master/creating/newGitbook.md but I'm getting a 404 error message.

Initial impression, great work!

3

Hi, I just looked at `debrowser` and I think that it's a great idea. It could be specially useful for teaching how to do RNA-seq data analysis without teaching R...

We want to create a collection of short videos (likely shared on YouTube) demonstrating how to use the different features in `biocthis`. We will collate these videos into a new...