rtracklayer
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lawremi
R interface to genome annotation files and the UCSC genome browser
Error persists even after suggestions given in issue #91 ``` > ucscGenomes() Error in names(df) BiocManager::version() [1] ‘3.18’ > sessionInfo() R version 4.3.0 (2023-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Rocky...
Hello @lawremi, I'm a [Sweave2Rmd](https://github.com/Bioconductor/sweave2rmd) volunteer. @jwokaty and I are trying to replace Bioconductor Sweave vignettes with R Markdown. It has many advantages over Sweave vignettes, such as R Markdown...
I reached some problems when I install rtracklayer on macOS. Even I tried re-install rtracklayer for a lot of times but it still cannot be loaded successfully. This is the...
Hi, I'm having trouble importing remote BigWig files with `derfinder`, [which internally](https://github.com/lcolladotor/derfinder/blob/5c1cbd412c5787bf2d2d778977e38dd6ae64976d/R/loadCoverage.R#L400) uses `rtracklayer::import()`. I noticed this when looking at `recount` which is failing on BioC 3.16 and 3.17 (details...
Hi I am new to rtracklayer. Just install it from the github. But when I run the test code: ``` test_path
Hello, I'm trying to query subsets of Roadmap bed.gz files. However there seems to be some issues here: ## Reprex ### Code ```R URL
Hi all, Thanks for developing a fantastic tool for the community. I'm running into a liftOver issue [within another package](https://github.com/neurogenomics/MungeSumstats/issues/104), and thought I would raise the issue here. Namely, when...
Other `import.*` functions simply ignore the `which=` arg when it's set to `NULL`, but `import.bb` throws an error instead # Reprex ## Code ```R f
``` > ucscGenomes() Error in UseMethod("xmlNamespaceDefinitions") : no applicable method for 'xmlNamespaceDefinitions' applied to an object of class "NULL" ``` According to the function description it would populate data from...
