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How to add gap line in lncRNA graph by using ggplot

Open zm20074970 opened this issue 10 years ago • 1 comments

Hello, all, I try to use ggbio to create a lncRNA database(http://www.lncipedia.org/downloads/lncipedia_3_0.gtf), but I got a warning like that ""gap" is not matching to following arbitrary model terms"cds CDS Cds exon EXON Exon utr UTR Utr"", so there is no gap line in my transcripts, how to add the gaps? my commends are below: txdblnc <- makeTranscriptDbFromGFF(file="lncipedia_3_0.gtf", format = 'gtf') wh <- GRanges("chr10", IRanges(93525000, 93656000)) p4 <- autoplot(txdblnc, wh, color = "Dark Green", fill = "Dark Green")

zm20074970 avatar Dec 11 '14 01:12 zm20074970

@zm20074970 Have you solved it?

Sherry520 avatar Mar 16 '19 02:03 Sherry520