Laura Luebbert, Ph.D.

## Project description [gget](https://github.com/pachterlab/gget/tree/main) is a Python and command line tool that facilitates access to information stored in large public genomic databases. It consists of a collection of separate but...

Request databases to be added to gget

3

https://omnipathdb.org/

Add module to depmap database

1

### Request type New module ### Request description https://depmap.org/ ### Example command _No response_ ### Example return value _No response_

### Request type New module ### Request description https://www.broadinstitute.org/mitocarta/mitocarta30-inventory-mammalian-mitochondrial-proteins-and-pathways ### Example command _No response_ ### Example return value _No response_

### Request type New module ### Request description https://reactome.org/ ### Example command _No response_ ### Example return value _No response_

### Request type Extension of existing module ### Request description https://www.ncbi.nlm.nih.gov/books/NBK569856/ ### Example command _No response_ ### Example return value _No response_

gget will currently create a "tmp" folder in your home directory ("~/tmp/jackhmmer/") for the Jackhmmer search. I think adding an option to change this path is a great idea for...

See muscle v5 documentation: https://drive5.com/muscle5/

### Request type New module ### Request description New module that interfaces with https://github.com/tomouellette/pineapple (suggested by Prof. Anne Carpenter) ### Example command _No response_ ### Example return value _No response_