Andras Lasso

Make sure you selected the correct kernel in the notebook (i.e., select the debug-mode kernel if you use a Slicer that you have built in debug mode).

Have you updated 3D Slicer source code recently?

Yes, sure, you just need to add the folders where your modules are to "Additional module paths" in Slicer application settings - see https://slicer.readthedocs.io/en/latest/developer_guide/extensions.html#run-slicer-with-your-custom-modules

Please review&merge. This is a very low-risk change and allows prediction on Windows both using CPU and GPU. (Tested using TotalSegmentator in Python 3.9)

Would you consider adding support for NRRD file format for accepting input data and generating output? Out of all the 3D medical image file formats, only NIFTI is so problematic:...

`pynrrd` works well for reading/writing nrrd files. There have been some initiatives to add nrrd support to nibabel (see [here](https://github.com/nipy/nibabel/issues/356)). Maybe the simplest would be to make that happen, because...

This SimpleITK version requirement should be simply removed. There are some invalid nifti files that certain SimpleITK versions reject to load, but that should not be a reason to give...

Awesome, thank you! Dcm2niix developer Chris Rorden is very knowledgeable and responsive, so if you report the issue then he can surely fix it very quickly. Maybe it is already...

Is the change available in a released TotalSegmentator version? (git+https requires users to have git installed, which is not the case for many non-progtammer users)

Thank you @wasserth - installing the latest TotalSegmentator from https://github.com/wasserth/TotalSegmentator/archive/master.zip works very well. No need for git and no need for the ugly SImpleITK installation hack anymore.