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[WIP] Atomic collision model

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Working on merging in the atomic collision model. So far it builds, but is untested. ### Remaining Items - [ ] Run a test case with devel - [ ]...

jjaraalm

rfbird

rfbird

Can we bring them together some how? parameterize out the paths?

rfbird

rfbird

Integrated Tests are not rebuilt when their deck is changed

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rfbird

Add Clang format

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@dnystrom1 this is what clang format would look like

rfbird

The current way the stride is calculated for the checkpoint is broken in 2d (but works for 3d)

rfbird

VPIC crashes if the decomposition leaves the grid size as nx/ny/nz=1

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This is obviously not a very likely scenario, as we run on meshes much bigger than this, but it may be a useful case for testing computational intensive modules (and...

rfbird

band_interleave hydro_dump

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Hi, This is a new user question: In `src/vpic/dump.cc`, the `band_interleave` branch of `hydro_dump` seems to not correctly set the `dim` array to include ghost layer: ```c dim[0] = nxout;...

liangwang0734