Lambda Moses

Already done in https://github.com/pachterlab/voyager/commit/06990b26eb4416814e298300a4004efa1e0d4a96, though not the KDE part yet

Yes, aligning the sections to a standard space will make it easier. Of course there are many open questions about ESDA for multiple samples that are unaddressed in the geospatial...

Another thing I want to explore: there's `sample_id` to perform joint analyses across samples while still keeping the spatial stuff distinguishable. The joint analyses can be non-spatial like clustering based...

That comes from `arrow`. See https://github.com/pachterlab/SpatialFeatureExperiment/issues/48 I'm working on rewriting all functions using transcript spots to use `arrow::open_dataset()` to not to load all transcripts into memory and process the transcript...

This is because the Parquet GDAL driver is required to selectively read transcript spots for one gene. The default GDAL binary is quite old and does not have the Parquet...

What version of SpatialFeatureExperiment and Bioconductor are you using? It sounds like an error from an old version that has already been fixed. The code runs with the newest version...

OK, I was running the devel version. Now Bioc 3.20 branch is frozen as release of 3.21 is coming soon. Can you try installing Bioc 3.21 and see if the...

You can still install devel version of SFE from GitHub without R devel

What Bioconductor version are you using? I though I fixed this a long time ago.

Yes, I also do that. You can use `sf::st_read()` to read GeoJSON file as a `sf` data frame, make sure to set `crs = NA`; CRS is the different ways...