pLM-BLAST

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Regardless of the parameters used, aligning a sequence to itself yields the best scoring alignment with a score slightly

staszekdh

It seems that part of mathematical operations should be done on gpu - which may speed up the whole search. This task will require to create a specific embedding loader...

MiTRonGTE

Redundant alignment shift

2

Dear developers, Thanks very much for this excellent software. I encountered these redundant local alignments after postprocessing (see the figure). These alignments are several-residue shifted with each other, and i...

KYQiu21

Multi-GPU support in embeddings.py

3

``` python embeddings.py start data_set_fullseq.fasta data_set_fullseq -embedder pt --gpu -bs 0 ``` When run as above, everything works fine. However, if I use the `-nproc 2` flag, the computations are...

staszekdh