AlphaFold3

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[BUG] Problems with local install

1

**Describe the bug** Problems with local install. **To Reproduce** Steps to reproduce the behavior: ```shell ❯ pip install alphafold3 Collecting alphafold3 Using cached alphafold3-0.0.4-py3-none-any.whl.metadata (4.9 kB) Collecting einops (from alphafold3)...

partrita

Thanks

2

Thanks for your job~ ## Upvote & Fund - We're using [Polar.sh](https://polar.sh/kyegomez) so you can upvote and help fund this issue. - We receive the funding once the issue is...

virgo777

See the title. The example doesn't work at the moment because of a typo in model.py. I fixed the typo.

CamelCaseCam

[BUG] ModuleNotFoundError: No modulel name 'scripts'.

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**Describe the bug** I tried to pip install AlphaFold3 locally on a Linux server, but encountered an error ( "ModuleNotFoundError: No modulel name 'scripts'."). **To Reproduce** Steps to reproduce the...

skawakita84

[BUG] pip install alphafold

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$ pip install alphafold3 **ERROR: Could not find a version that satisfies the requirement alphafold3 (from versions: none) ERROR: No matching distribution found for alphafold3** ## Upvote & Fund -...

josemateusc

[BUG] another local installation problem from openfold: ModuleNotFoundError: No module named 'scripts' .

3

I had the same issue [#2](https://github.com/kyegomez/AlphaFold3/issues/2), however, when I installed torch+cu117 manually, ``` pip install -U torch==2.0.0+cu117 torchtext==0.15.1 --extra-index-url https://download.pytorch.org/whl/cu117 ``` this problem was gone. However, now, I am seeing...

rytakahashi

Updates the requirements on [ruff](https://github.com/astral-sh/ruff) to permit the latest version. Release notes Sourced from ruff's releases. v0.4.4 Changes Preview features [pycodestyle] Ignore end-of-line comments when determining blank line rules (#11342)...

dependabot[bot]

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start)...

dependabot[bot]

Updates the requirements on [black](https://github.com/psf/black) to permit the latest version. Release notes Sourced from black's releases. 24.4.2 This is a bugfix release to fix two regressions in the new f-string...

dependabot[bot]

Create paper_algorithms.py

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First pass at the supplemental Algorithms. Looking to comment the tensor shapes at every step.

lhallee