CoastSat icon indicating copy to clipboard operation
CoastSat copied to clipboard

Published 20 hours ago • verified publisher icon kvos

Conflict when installing Pyfes in coastsat env

Open ricsatjr opened this issue 3 years ago • 8 comments

I noticed the environment.yml has its latest commit from 11 months ago. Are the package versions listed there still compatible with the more recent updates to coastsat? Thanks.

ricsatjr avatar Feb 21 '22 22:02 ricsatjr

I think they are, usually people raise issues when they are not compatible anymore and then I update the .yml file The main one that tends to loose backwards-compatibility is the earth-engine-api package

kvos avatar Feb 21 '22 23:02 kvos

ok.

I was trying to install the pyfes from fbriols' channel at anaconda so I can use the coastsat.slope for tidal correction. The installation process yielded many conflicts, which based on the output, may be because of the strict channel imposed by the environment.yml file.

Here's the last part of the installation process for pyfes:

The following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.34=0
  • feature:|@/linux-64::__glibc==2.34=0
  • aiohttp -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • argon2-cffi -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • argon2-cffi-bindings -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • astropy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • blas -> libgfortran-ng -> __glibc[version='>=2.17']
  • blosc -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • brotli -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • brotlipy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • brunsli -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • bzip2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • c-ares -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • cairo -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • cffi -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • cfitsio -> libgfortran-ng -> __glibc[version='>=2.17']
  • charls -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • cryptography -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • curl -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • cytoolz -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • dbus -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • debugpy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • expat -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • fiona -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • fontconfig -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • freetype -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • freexl -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • frozenlist -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • gdal=2.3.3 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • geos -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • giflib -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • glib -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • google-crc32c -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • greenlet -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • grpcio -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • gst-plugins-base -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • gstreamer -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • hdf4 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • hdf5 -> libgfortran-ng -> __glibc[version='>=2.17']
  • icu -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • imagecodecs -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • jpeg -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • json-c -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • jxrlib -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • kealib -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • kiwisolver -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • krb5 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • lazy-object-proxy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • lcms2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • lerc -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libaec -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libboost -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • libcrc32c -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libcurl -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libdap4 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libdeflate -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libedit -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • libffi -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • libgcc-ng -> __glibc[version='>=2.17']
  • libgdal -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libgfortran-ng -> __glibc[version='>=2.17']
  • libkml -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libnetcdf -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libpng -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • libpq -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libprotobuf -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libsodium -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • libspatialindex -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libspatialite -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libssh2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libstdcxx-ng -> __glibc[version='>=2.17']
  • libtiff -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libuuid -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libwebp -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libxcb -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libxml2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • libzopfli -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • lz4-c -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • markupsafe -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • matplotlib -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • matplotlib-base -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • mistune -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • mkl-service -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • mkl_fft -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • mkl_random -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • multidict -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • ncurses -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • numpy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • numpy-base -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • openjpeg -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • openssl -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pandas=0.24.2 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • pcre -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pillow -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pixman -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • poppler -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • proj4 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • protobuf -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • psutil -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • psycopg2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pyerfa -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pyfes -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • pyproj -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pyqt -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • pyrsistent -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • python=3.7 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pywavelets -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pyyaml -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • pyzmq -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • qt -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • readline -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • regex -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • scikit-image -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • scikit-learn -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • scipy -> libgfortran-ng -> __glibc[version='>=2.17']
  • shapely -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • simplejson -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • sip -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • snappy -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • sqlalchemy -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • sqlite -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • tifffile -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  • tk -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • tornado -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • typed-ast -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • ujson -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • wrapt -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xerces-c -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xz -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • yaml -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • yarl -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • zeromq -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • zfp -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • zlib -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • zstd -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.34

Note that strict channel priority may have removed packages required for satisfiability.

ricsatjr avatar Feb 22 '22 00:02 ricsatjr

yes, there is an issue on that in CoastSat.slopes https://github.com/kvos/CoastSat.slope/issues/15

kvos avatar Feb 22 '22 00:02 kvos

yes, there is an issue on that in CoastSat.slopes kvos/CoastSat.slope#15

will do the separate environment solution that you proposed. thanks.

ricsatjr avatar Feb 22 '22 02:02 ricsatjr

ok, feel free to post on that other issue if it still doesn't work with a separate env. I'm still not sure how to fix that issue as the pyfes package keeps on being updated and changing the dependencies

kvos avatar Feb 22 '22 02:02 kvos

hi @ricsatjr , just found what was going on with this error. Basically, pyfes is not compatible with python 3.8, so you need python 3.7 to install pyfes and conda will not downgrade your python to a lower version. You can try to re-install coastsat on python 3.7.

kvos avatar Jun 16 '22 02:06 kvos

Thanks @kvos ! Will try this.

ricsatjr avatar Oct 13 '22 13:10 ricsatjr

this seems to have been resolved with more recent versions of pyfes.

kvos avatar Apr 09 '24 12:04 kvos