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Does order matter in complex design?

Open adc0032 opened this issue 3 months ago • 0 comments

https://github.com/kvittingseerup/IsoformSwitchAnalyzeR/blob/f6cd48a4c311db3a4ab6bfb95e6210d5177f69e5/R/test_isoform_switches.R#L639-L644

Hi i was looking to see how the blocking factors are being passed to DEXseq and I noticed that this is formatting the model slightly different from the DEXseq documentation here

does it make a difference in model interpretation to format batch:exon vs. exon:batch ?

adc0032 avatar Nov 19 '24 04:11 adc0032