IsoformSwitchAnalyzeR
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isoformFeatures and exons error could not be solved
Hi @chunxubioinfor I have checked the isoform_id from the gtf and isoform_id in salmon$counts, however, there is no difference between them. When I only use the isoform from iso-seq data instead of including the ENS* transcript, everything runs correctly. Do you have any suggestion? Best