Regarding PFAM output as input for IsoformSwitchAnalyzeR

[chandramisra]

Hi

I was having some issues going through some of the step (Part 2) and would be grateful if you can help me understand it. There in the package it says you need to do Pfam analysis separately and use the output from Pfam as an input for this step. I did run the Pfam (webserver) but the output I got (attached) is not exactly the same as is given in the example ( pathToPFAMresultFile = system.file("extdata/pfam_results.txt" ). Is there anything I am missing or the output from Pfam I get is correct, and I should continue.

Thanks for the help. Peptide example.txt

Regards Chandra Shekhar