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parameter tweaking for Dnase/ATAC-seq data
Dear developers,
I wonder if there is documentation/example for training based on Dnase/ATAC-seq input? I would highly appreciate suggestions on parameter tweaking!!
It seems ATAC/Dnase are supported model architectures from these lines in train_and_validate
:
if model_arch_name == "BPNet_ATAC_DNase":
model = get_model(
tasks, bias_tasks, model_arch_params, bias_model_arch_params,
name_prefix="main")
else:
model = get_model(tasks, model_arch_params, name_prefix="main")
Thanks!!