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parameter tweaking for Dnase/ATAC-seq data

Open ChangxuFan opened this issue 2 years ago • 1 comments

Dear developers,

I wonder if there is documentation/example for training based on Dnase/ATAC-seq input? I would highly appreciate suggestions on parameter tweaking!!

It seems ATAC/Dnase are supported model architectures from these lines in train_and_validate:

    if model_arch_name == "BPNet_ATAC_DNase":
        model = get_model(
            tasks, bias_tasks, model_arch_params, bias_model_arch_params, 
            name_prefix="main")
    else:        
        model = get_model(tasks, model_arch_params, name_prefix="main")

Thanks!!

ChangxuFan avatar May 10 '22 21:05 ChangxuFan