slingshot
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kstreet13
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
Hi there, Thank you so much for developing such a wonderful tool for all of us! I was wondering if I might get your opinion on my curve/lineage data to...
I want to do a trajectory analysis using slingshot on my seurat object. But the function feature_mapper that is created uses feature_info. How do I extract this from my seurat...
Hi @kstreet13, After using slingshot I get 5 different lineages. My dataset is integrated between two conditions. And I am interested in the genes that differ between those 2 conditions...
Hi, I performed a Slingshot analysis on my Seurat data in R, and would like to import the output to CellRank in Python for a follow up analysis. However, I...
Hi Kelly, Thank you for developing this amazing package. I received 22 warning messages (which is the same as number of clusters in the sce object) when running slingshot using...
Hi Kelly, First of all, thank you for producing and maintaining this package, it is great and gave me very interesting insights about my data. I recently came across [this...
Hi, Thank you for producing and maintaining this package; it gives me a good insight into lineage trending. I have a question: Can I use more than two dimensions as...
We have a single cell time series data set (same cell type) that we're trying to get pseudotime for. We want it to have a single trajectory with no branching...
Hi, Thank you for producing and maintaining this package, it gives me good insight of lineage trending. I set an initial cluster, but the endpoints of the lineage somehow fall...
