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Published 20 hours ago • verified publisher icon ksamuk

csi index

Open giuliafrascarelli opened this issue 2 years ago • 3 comments

Hi! First, thank you for the nice program!

I am currently working with lentil WGS data and the vcf cannot be tbi indexed but I found that Pixy does not support the csi index. There is a way to solve the problem or do you have any suggestions?

Thanks! Giulia

giuliafrascarelli avatar Jan 31 '23 14:01 giuliafrascarelli

Hi Giulia, there isn't currently support for .csi indexes, but I'd like to add it in a future update. The only way around this currently would be to split your VCF into smaller chunks and re-index with .tbi.

ksamuk avatar Feb 02 '23 19:02 ksamuk

Hi,

Also request for csi indexes supporting.

Best, Kun

xiekunwhy avatar May 28 '24 18:05 xiekunwhy

Hi,

Request for csi index supporting.

Best,

Wei

Jolvii85 avatar Aug 12 '24 09:08 Jolvii85