ultra
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ksahlin
Long-read splice alignment with high accuracy
Hi, Can I use ultra to align est sequences (not long reads) to references ? Best, Kun
Hello, I encountered the following errors when trying to run uLTRA index and uLTRA align. Help resolving this issue would be greatly appreciated. See image for more details. 
hello , I want to mapping gencode.v43.transcripts.fa and GRCh38.primary_assembly.genome.fa, I have some problems during using uLTRA, I would like to ask why there is such an error? >code: ``` uLTRA...
Hi Kristoffer, During nf-core/isoseq test jobs, I randomly have a bug: ``` total_flanks2: 20352 total_flank_size 20395551 total_unique_segment_counter 7303161 total_segments_bad 5517888 bad 89736 total parts size: 7391334 total exons size: 20040918...
Hi, I'm running uLTRA on a cluster with 48 CPU cores and 196 GB RAM per node. If I call uTLRA like this to align direct RNA reads to an...
```bash Environment set: Using 16 cores. Filtering reads aligned to unindexed regions with minimap2 Done filtering. Reads filtered:7587 batch nt: 16444094 total_nt: 263105501 27073 26857 27083 27130 27307 27044 26775...
Hey Kristoffer, I was wondering if you were considering making python binding of ultra similar to mappy for minimap2? Thanks, Chang
Originally reported as arising from issue #2. If the length of the quality value fields differs from the length of the sequence, uLTRA will align only a subset of the...
