strobemers

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OMP parallellism generates wrong strobe<--> read associations in the index

1

@ksahlin **Fix:** we had to comment this line in `main.cpp` to cancel parallelism: `//#pragma omp parallel for num_threads(n_threads) shared(read_cnt, output_file, q_id) private(acc,seq_rc, query_mers,query_mers_rc)` **Bug observed with parallelism:** - For a...

blinard-BIOINFO

How to get the most random randstrobes in compiled languages?

7

### Background Randstrobes is a method for linking two or more k-mers together into a seed that can be used for sequence mapping. I intend the below post to be...

ksahlin

Is it possible to output query positions

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Hi, In matches.tsv (python StrobeMap) is it possible to output both reference and query match positions. Thanks and best regards, Matt

moorembioinfo

Using strobemers bidirectionally to minimize effect of low hash bias + read border cases

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Hey @ksahlin! Background First of all, it was fun to look at something other than "just" k-mers ;) nice idea! I was looking at the strobemers papers/code and in the...

rickbeeloo