strobealign
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Skip to compute merge_hits_into_nams_forward_and_reverse if nonrepetitive_fraction above threshold
Strobealign could exit early, i.e., not compute merge_hits_into_nams_forward_and_reverse()
, if nonrepetitive_fraction
is higher than the threshold we have since strobealign will anyway have to enter find_nams_rescue()
The only case this would fail is if map_param.rescue_level
is set to 0 (through -R 0
). However, I have never used anything other than the default rescue level of 1 and don't know it anyone sets this parameter.
Leaving this here for now. We may make some other changes (related to rescue, seed symmetry, and multi-context) that may render this unnecessary.